Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015798246.1_cds_XP_016459258.1_5245
CDS Infomation

[gene=LOC107782807] [db_xref=GeneID:107782807] [protein=putative clathrin assembly protein At5g35200] [protein_id=XP_016459258.1] [location=join(4356..4454,4540..4609,4715..4812,6277..6418,6507..6607,6922..7005,7440..7490,7575..7640,7729..7794,7911..7991,8088..8165,8425..8583,8668..8743,8828..8946,9376..9744)] [gbkey=CDS]
Sequence

ATGTCGGGAGGAGGTACGCAGAACAGCTTAAGAAAAACCCTTGGAGCACTTAAGGATACA
ACTACTGTCAGTTTAGCTAAAATTAATAGCGGCTATAAGGAATTGGATATTGCTATAGTT
AAGGCAACGAATCATGTTGAACAGCCAGCAAAAGAGAAGTACATAAGAGCCATTTTTTCT
GCCATTTCGGCTACCAGGCCTCGAGCTGATGTTGCATACTGCATTCATGCTCTCGCAAGA
AGATTGTCGAAGACGCATAATTGGGCGGTTGCGCTAAAAACATTGATCGTCATTCACCGC
GCTTTAAGAGAGGTGGACCCTACATTCCAGGAGGAACTTATTAACTATGGTCGCAGCAGA
AATCGCATGCTTAACATGGCTCATTTCAAAGATGACTCTAGTCCAAATGCATGGGATTAC
TCTGCTTGGGTGCGTTCGTATGCCTTGTTCCTAGAGGAGAGGCTGGAATGTTTCCGAGTG
CTGAAATATGATGTGGAGACCGATCGTCCGAGAACTAAAGATCTGGACACACCGGAGTTG
CTTGAACAGTTACCAGCCTTACAGCAACTTCTGTATCGTATTATCGGCTGTCAGCCACAA
GGGGCGTCCGTTCACAATTTTGTGGTTCAGTTGGCACTTTCAATGGTTGCTTCAGAGAGC
ATTAAAATCTACAACGCTATCAGTGATGGTACAGTTAATTTAGTTGACAAGTTCTTTGAG
ATGCAACGGAATGATGCTCTTAGGTCTCTTGATATATACCGCAGAGCTGGTCAGCAGGCT
GAGGCACTTTCAGAGTTTTACGAAATATGTAAAAGTATTGACGTGGGACGTGGCGAGAAA
TTTATTAAAATTGAGCAGCCCCCTGCATCATTTTTACAAGCAATGGAGGAGTATGTGAGA
GAAGCACCACGAGCTTCTACCGTGCGGAAAGATTCGGAACCCAAAGCTATTTTGGCTATT
GAGTACAAAAAGGACTCAGAGGTCAAAGATGCTGGCTCCCATTCTCCCCCTCCACCTGAA
CCTGAAAAGGAACCTGAACCAAAGCCAGAGCCGGTTAAAACGGAAGCTCCGCCAGCAGAA
CCTGCTGATCTTTTGTCTTTGGATGATCCTTCTCCAGCAGTTGCAGAACTAGATGAGAAA
AATTCTTTGGCTTTAGCTATCATACCAGTTGGCTCTAGCAACCCACCGGCTTCAACCGGT
TCAAATTTTACTAATGGAGCTACAGGTTGGGAATTGGCTCTTGTCGAAGCTCCCAGCTCG
AATGAGAGTGCCACTACAGCTAGTAAACTGGCCGGAGGACTTGACAAACTTACGCTAGAT
AGTTTGTATGATGATGCAATGAGACAAACCAACCAAAATGTGAGCTATAATCCGTGGGAA
CCAGCACCAGCAGCTTCTCAAATGATGCCGAACGTAGGATACGACCCGTTCTACGTCTCC
AACATGGTGGCTGCCCCAACTAATGTGCAGATGGCAGCCATGGCCAACCAGCAACAGGCT
TTCATGTTACAGCAACAACAACAACAGATGATGATGATGACTCCCCAACCACTGCTAACT
GCGAATCCTTTCGCCAACCCTTACGGAGCAAATGCCAATCCATACGGCCCCGGTATGCCT
GTACAAGCATATAATCCCTATAATACTGGCCTCATTTGA

Peptide Sequence

PEP ID

XP_016459258.1
PEP Infomation

PREDICTED: putative clathrin assembly protein At5g35200 [Nicotiana tabacum]
Sequence

MSGGGTQNSLRKTLGALKDTTTVSLAKINSGYKELDIAIVKATNHVEQPAKEKYIRAIFS
AISATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFQEELINYGRSR
NRMLNMAHFKDDSSPNAWDYSAWVRSYALFLEERLECFRVLKYDVETDRPRTKDLDTPEL
LEQLPALQQLLYRIIGCQPQGASVHNFVVQLALSMVASESIKIYNAISDGTVNLVDKFFE
MQRNDALRSLDIYRRAGQQAEALSEFYEICKSIDVGRGEKFIKIEQPPASFLQAMEEYVR
EAPRASTVRKDSEPKAILAIEYKKDSEVKDAGSHSPPPPEPEKEPEPKPEPVKTEAPPAE
PADLLSLDDPSPAVAELDEKNSLALAIIPVGSSNPPASTGSNFTNGATGWELALVEAPSS
NESATTASKLAGGLDKLTLDSLYDDAMRQTNQNVSYNPWEPAPAASQMMPNVGYDPFYVS
NMVAAPTNVQMAAMANQQQAFMLQQQQQQMMMMTPQPLLTANPFANPYGANANPYGPGMP
VQAYNPYNTGLI

Transcript Sequence

Gene sequence data has not been registered.